Files in ksamuk/syntR
Detection of synteny blocks via comparison of genetics maps
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/adjust_blocks.R
R/build_neighbour_rank_lists.R
R/find_initial_blocks.R
R/find_k.R
R/find_synteny_blocks.R
R/group_clusters.R
R/make_one_map.R
R/plot_maps.R
R/plot_summary_stats.R
R/split_blocks.R
R/syntR-package.R
R/test_parameters.R
R/utils-pipe.R
R/zzz.R
README.Rmd
README.html
README.md
_pkgdown.yml
data/ann_chr_lengths.rda
data/ann_pet_map.rda
data/tutorial_data_ann_chr_max.txt
data/tutorial_data_ann_pet_comparison.txt
doc/syntr_tutorial.R
doc/syntr_tutorial.Rmd
doc/syntr_tutorial.html
docs/articles/index.html
docs/articles/syntr_tutorial.html
docs/articles/syntr_tutorial_files/figure-html/find_blocks-1.png
docs/articles/syntr_tutorial_files/figure-html/find_blocks-2.png
docs/articles/syntr_tutorial_files/figure-html/find_blocks-3.png
docs/articles/syntr_tutorial_files/figure-html/find_blocks3-1.png
docs/articles/syntr_tutorial_files/figure-html/find_params-1.png
docs/articles/syntr_tutorial_files/figure-html/plot_map-1.png
docs/articles/syntr_tutorial_files/figure-html/reorder_map-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/adjust_blocks.html
docs/reference/build_neighbour_rank_lists.html
docs/reference/find_initial_blocks.html
docs/reference/find_k.html
docs/reference/find_synteny_blocks.html
docs/reference/group_clusters.html
docs/reference/index.html
docs/reference/make_one_map.html
docs/reference/pipe.html
docs/reference/plot_maps.html
docs/reference/plot_summary_stats.html
docs/reference/split_blocks.html
docs/reference/syntR-package.html
docs/reference/test_parameters.html
index.Rmd
inst/figures/logo.png
inst/figures/logo_small.png
man/adjust_blocks.Rd
man/build_neighbour_rank_lists.Rd
man/find_initial_blocks.Rd
man/find_k.Rd
man/find_synteny_blocks.Rd
man/group_clusters.Rd
man/make_one_map.Rd
man/pipe.Rd
man/plot_maps.Rd
man/plot_summary_stats.Rd
man/split_blocks.Rd
man/syntR-package.Rd
man/test_parameters.Rd
syntR.Rproj
vignettes/.gitignore
vignettes/syntr_tutorial.Rmd
