find_synteny_blocks: Find shared synteny blocks by comparing two genetics maps
In ksamuk/syntR: Detection of synteny blocks via comparison of genetics maps

Description Usage Arguments Value Examples

Find shared synteny blocks by comparing two genetics maps

1 2	find_synteny_blocks(map_list, max_cluster_range, max_nn_dist, min_block_size = 2, plots = FALSE)

`map_list`	list, a 'map_list' object created by make_one_map
`max_cluster_range`	numeric, the maximum distance between markers for them to be considered in the same cluster
`max_nn_dist`	numeric, the maximum distance for a singleton to be considered an outlier
`min_block_size`	numeric, the minimum size of a synteny block
`plots`	logical, should plots be included as output?

A list of length 3 containing synteny block assignments for each marker

# load data
data(ann_pet_map)

# convert data to a single ordered scale
map_list <- make_one_map(ann_pet_map)

# find synteny blocks
synt_blocks <- find_synteny_blocks(map_list, max_clust_range = 2, max_nn_dist = 10, plots = TRUE)