test_parameters: Test the performance of a range of clustering parameters for...

In ksamuk/syntR: Detection of synteny blocks via comparison of genetics maps

Description

Test the performance of a range of clustering parameters for a given map_list

Usage

test_parameters(map_list, max_cluster_range_list, max_nn_dist_list,
  min_block_size = 2, progress_bar = FALSE)

Arguments

map_list	list, a map_list object generated by find_synteny_blocks
max_cluster_range_list	list of length 2, the minimum and maxmium values for max_clust_range
max_nn_dist_list	list of length 2, the minimum and maxmium values for max_nn_dist
min_block_size	numeric of length 1, the minimum size of a synteny block

Value

a list containing a summary of clustering performance for each parameter combination

ksamuk/syntR documentation built on Feb. 11, 2021, 4:46 a.m.