Man pages for ksamuk/syntR
Detection of synteny blocks via comparison of genetics maps
| adjust_blocks | Adjust synteny blocks based on chromosome breaks |
| build_neighbour_rank_lists | Build list of cluster 'neighbourhoods' connected by proximity |
| find_initial_blocks | Peform initial hierarchical clustering of markers |
| find_k | Find the optimal number of synteny blocks (i.e. k) |
| find_synteny_blocks | Find shared synteny blocks by comparing two genetics maps |
| group_clusters | Interavely consolidate and group marker cluster... |
| make_one_map | Consolidate and prepare map data for synteny block detection |
| pipe | Pipe operator |
| plot_maps | Plot markers in two genetic maps |
| plot_summary_stats | Create a heat map of summary statistics generated by... |
| split_blocks | Split and reorder synteny blocks |
| syntR-package | syntR: Detection of synteny blocks via comparison of genetics... |
| test_parameters | Test the performance of a range of clustering parameters for... |
