Man pages for ksauby/GTMNERRproc
Data processing functions for GTMNERR data.
| addSamplingPeriods | Add Sampling Period Variable |
| analyzeBootstrappedMatrixPopModels | Analyze Bootstrapped Matrix Population Models |
| analyzeMatrixPopModels | Analyze Matrix Population Models |
| calculateClonalReproduction | Calculate Clonal Reproduction |
| calculateFruitPresence | Determine Fruit and Flower Presence |
| calculateNumberIndivperStage | Create Vector of the Number of Individuals per Stage |
| calculatePlantVolume | Calculate Plant Volume |
| calculateStageDistribution | Calculate Observed Stage Distribution |
| calculateTransitionRates | Create Transition Rate Matrix |
| changeVariableNames | Abbreviate Variable Names |
| checkPlantSurveys | Check Plant Surveys for Errors |
| classifybyStage | Classify plants by Stage |
| createClonalReproTransitionMatrix | Create Clonal Reproduction Transition Matrix |
| createDeadFactorVariable | Create Dead Variable (Factor Type) |
| createHabitatType | Process Create Habitat Type Variable |
| createInsectFactorVariables | Make Insect Factor Variables |
| createMothOccupancytVariable | Create Moth Occupancy Variable |
| createMothOccupancyVariable | Create Moth Occupancy During Study Variable |
| createNewInsectVariables | Calculate Insect Variables |
| createPlantInfobyPlant | Create Plant Info by Plant |
| createPlantInsectPresence | Create Moth Evidence and Insect Evidence Variables |
| createPlantSurveysbyYear | Create Dataset by Year |
| createPlotSurveysfromOrigPlantSurveys | Create occupancy plot survey data from original plant survey... |
| createPlotSurveysfromPlantSurveys | Create occupancy plot survey data from plant surveys |
| createProjectionMatrix | Create Projection Matrix |
| createSequenceofDates | Create sequence of dates, by fecundity year, to use as date... |
| destring | Convert character vector to numeric, ignoring irrelevant... |
| determineCompleteSurveys | Determine whether a survey was complete |
| determineInsectPresenceDuringStudy | Determine if an insect species was ever detected during the... |
| estimateCactusDensityperPlot | Estimate cactus density per plot |
| findFirstDeadMissingObservation | Filter Plant Surveys by Plant and Keep Only the First... |
| firstup | from... |
| fixDeadRecords | Fix Dead Records for Transition Matrix Data |
| fixInconsistentDeadMissingRecords | Fix Surveys for Plants with Inconsistent Records of... |
| Format_PlantIDs_Function | Format PlantID |
| mergeDuplicateSurveys | Merge Duplicate Surveys |
| mergePlantRecordsfromMultiplePlots | Merge Plants from Multiple Plots |
| mergePlantSurveysPlotSurveys | fill occupancy plot surveys with info from plant surveys |
| mergePlotSurveysDemoPlotSurveys | fill demography plot surveys with info from plant surveys |
| plotElasticitySensitivity | Plot Elasticity and Sensitivity Data |
| plotLTREReproductiveValues | Plot Reproductive Values for LTRE |
| plotSeedBankSeedSurvival | Plot Seed Bank Data |
| prepDataTransitionMatrix | Prepare Data For Transition Matrix Function |
| printLTREPopulationMatrices | Successively print LTRE population matrices for inclusion in... |
| printPopulationMatrices | Successively print population matrices for inclusion in an... |
| processOccupancyPlotInfo | Process Plot Survey Data |
| processOccupancyPlotSurveys | Process Plot Survey Data |
| processOriginalPlantData | Process Original Plant Survey Data |
| processPlantInfo | Process Plant Info |
| processPlantSurveys | Process GTMNERR Plant Survey Data |
| processPlantSurveysbyYear | Process Plant Surveys by Year data |
| processPopulationModelingResults | Process Population Model Results |
| processSurveysMergedbyPlant | Process Plant Survey Data, per plant |
| renamePatches | Rename Patches |
| renameSpecies | Rename Species levels |
| runBootstrapPopulationModels | Run Boostrapped Population Models |
| runPopulationModels | Run Population Models |
| SequenceofDates | Datasets of sequence of dates, by fecundity year, to use as... |
| WoodyTrunk_Function | Standardize "WoodyTrunk" values. |
