kstammits/rgsepd: Gene Set Enrichment / Projection Displays

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Getting started

Package details

AuthorKarl Stamm
Bioconductor views DifferentialExpression GeneSetEnrichment ImmunoOncology RNASeq Software
MaintainerKarl Stamm <[email protected]>
LicenseGPL-3
Version1.15.16
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("kstammits/rgsepd")
kstammits/rgsepd documentation built on May 23, 2019, 2:50 p.m.