Files in kstreet13/VDJdive
Analysis Tools for 10X V(D)J Data
.BBSoptions
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/abundanceVDJ.R
R/barVDJ.R
R/boxVDJ.R
R/calculateDiversity.R
R/clonoStats.R
R/clonoStats_class.R
R/clonoStats_helpers.R
R/contigs.R
R/pieVDJ.R
R/runBreakaway.R
R/runVDJPCA.R
R/scatterVDJ.R
R/setup.R
R/utils.R
README.md
data/contigs.rda
inst/NEWS
man/abundanceVDJ.Rd
man/addVDJtoSCE.Rd
man/barVDJ.Rd
man/boxVDJ.Rd
man/calculateDiversity.Rd
man/clonoStats-class.Rd
man/clonoStats.Rd
man/contigs.Rd
man/figures/logo.png
man/pieVDJ.Rd
man/readVDJcontigs.Rd
man/runBreakaway.Rd
man/runVDJPCA.Rd
man/scatterVDJ.Rd
man/splitClonotypes.Rd
man/summarizeClonotypes.Rd
man/writeVDJcontigs.Rd
src/RcppExports.cpp
src/RcppExports.o
src/TCR_EM.cpp
src/TCR_EM.o
src/VDJdive.so
tests/testthat.R
tests/testthat/test-VDJdive.R
vignettes/workflow.Rmd
