runBreakaway | R Documentation |
This function uses the Breakaway method to estimate the
clonotype richness (total number of clonotypes) present in each group of a
clonoStats
object.
runBreakaway(x, ...)
## S4 method for signature 'clonoStats'
runBreakaway(x, nof1 = FALSE, ...)
x |
A |
... |
Additional arguments passed to |
nof1 |
logical. Indicates whether to use the |
A list of alpha_estimate
objects, one per group, containing
detailed results of running the Breakaway estimator on the vector of
clonotype frequencies from that group.
Willis, A. and Bunge, J. (2015). Estimating diversity via frequency ratios. Biometrics.
Willis, A. (2015). Species richness estimation with high diversity but spurious singletons. arXiv.
data('contigs')
x <- clonoStats(contigs, method = 'unique')
runBreakaway(x)
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