writeVDJcontigs: Write V(D)J contig data in 10X format

In kstreet13/VDJdive: Analysis Tools for 10X V(D)J Data

Write V(D)J contig data in 10X format

Description

Write V(D)J data to a series of directories, each containing a CSV file with the data for an individual sample.

Usage

writeVDJcontigs(path, x, ...)

## S4 method for signature 'character,SplitDataFrameList'
writeVDJcontigs(path, x)

Arguments

path	A string containing the path to the output directory.
x	A SplitDataFrameList object containing V(D)J contig information, split by cell barcodes, as created by readVDJcontigs.
...	additional arguments.

Value

Creates various subdirectories of the directory specified in path. Each subdirectory is named for a sample found in the dataset, x, and contains a CSV filed named filtered_contig_annotations.csv.

Examples

data('contigs')
loc <- tempdir()
writeVDJcontigs(loc, contigs)

kstreet13/VDJdive documentation built on May 27, 2023, 8:08 a.m.