HistologyImage-class: The 'HistologyImage' - Class

In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

The HistologyImage - Class

Description

S4 class that represents histology images.

Slots

annotations

list. List of objects of class ImageAnnotation.

dir_default

character. The default directory that is used to load the image if slot @image is empty. Or a string linking to the default slot ('highres' or 'lowres').

dir_highres

character. Directory to the high resolution version of the image.

dir_lowres

character. Directory to the low resolution version of the image.

grid

data.frame. A data.frame that contains at least a variable named x and a variable named y representing a grid.

id

character. String to identify the object in a list of multiple objects of the same class. Usually refers to the sample name of the SPATA2 object.

image

Image.

info

list. A flexible list that is supposed to store miscellaneous information around the image.

misc

list. A flexible list for miscellaneous input.

kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.