check_color_to: Check color to
In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

check_color_to

R Documentation

Check color to

Description

A member of the adjusting-check_()-family. Takes a character vector and sorts its elements into a list depending on whether it was found in the input of all_features, all_genes or all_gene_sets.

Returns a list with one slot named features, genes or gene_sets containing the respective found/valid input of color_to.

Usage

check_color_to(
  color_to,
  color_by,
  all_features = character(),
  all_gene_sets = character(),
  all_genes = character(),
  max_length = NULL
)

Arguments

`color_by`	The variable to be displayed by color: Gene set as a single character value. Must be in `getGeneSets()` Genes as a character vector. If more than one gene is specified the average expression of those genes will be calculated and displayed. Must be in `getGenes()` Feature as a single character value. Must be in `getFeaturenNames()`
`all_features`	The valid features specified as a character vector.
`all_gene_sets`	The valid gene sets specified as a character vector.
`all_genes`	The valid genes specified as a character vector.