check_dea_df: Check de data.frame

In kueckelj/SPATA2: A Toolbox for Spatial Expression Analysis

Check de data.frame

Description

Check de data.frame

Usage

check_dea_df(dea_df)

Arguments

dea_df

A data.frame containing information about differentially expressed genes. Must contain the variables: gene Character. The differentially expressed genes. cluster Character. The clusters (or experimental groups) across which the analysis was performed. avg_logFC Numeric. The average log-fold change to which the belonging gene was differentially expressed.. p_val Numeric. The p-values. p_val_adj Numeric. The adjusted p-values. Hint: Use the resulting data.frame of SPATA::findDE() or it's descendants as input.

kueckelj/SPATA2 documentation built on Feb. 27, 2025, 1:45 p.m.