check_stdf: Check summarized trajectory data.frame
In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

check_stdf

R Documentation

Check summarized trajectory data.frame

Check summarized trajectory data.frame

check_stdf(stdf, shift = NULL)

stdf

A data.frame containing information about a spatial trajectory. Must contain the variables:

trajectory_part: Character. The trajectory's subparts.
trajectory_part_order: Numeric. Denotes every trajectory-bin's position along the trajectory's subpart.
trajectory_order: Numeric. Denotes every trajectory-bin's position along the whole trajectory.
variables: Character. The genes, gene-sets and features that have been summarized along the trajectory.
values: Numeric. The binned values of every gene, gene-set and feature that has been summarized along the trajectory.