check_variables: Check variables
In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

check_variables

R Documentation

Check variables

Description

A member of the adjusting-check_()-family. Takes a character vector and sorts its elements into a list depending on whether it was found in the input of all_features, all_genes or all_gene_sets.

Returns a list with one slot named features, genes or gene_sets containing the respective found/valid input of color_to.

Usage

check_variables(
  variables,
  all_features = character(),
  all_gene_sets = character(),
  all_genes = character(),
  max_length = Inf,
  max_slots = 3,
  simplify = FALSE
)

Arguments

`variables`	Character vector. The variables of interest: Gene sets: Must be in `getGeneSets()` Genes: Must be in `getGenes()` Features: Must be numeric ones of `getFeatureNames()`
`all_features`	Valid features.
`all_gene_sets`	Valid gene sets.
`all_genes`	Valid genes.
`max_length`	Max number of variable input.
`max_slots`	Max number of different aspects.
`simplify`	If set to TRUE the `check_variables()`-output is a vector.