getImageDirLowres: Obtain image directories

In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

Obtain image directories

Description

Extracts image directories known to the SPATA2 object.

Usage

getImageDir(object, name)

getImageDirDefault(object, fdb_fn = "warning", check = FALSE, ...)

getImageDirectories(object)

getImageDirHighres(object, fdb_fn = "warning", check = FALSE, ...)

getImageDirLowres(object, fdb_fn = "warning", check = FALSE)

Arguments

object	An object of class spata2.
name	Character value. The name of the image of interest. Should be one of Get
check	Logical value. If TRUE, it is checked if the file actually exists.
...	Used to absorb deprecated arguments or functions.

Details

getImageDirectories() returns all image directories known to the SPATA2 object. getImageDirLowres(), getImageDirHighres() and getImageDirDefault() return the directories of the respective slot of the HistologyImaging object. getImageDir() extracts specific directories that were set with setImageDir() by name.

Value

Character vector.

See Also

setImageDir() to set specific image directories. loadImage(), loadImageHighres(), loadImageLowres(), loadImageDefault() to exchange images.

kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.