getSmrdResultsDf: Obtain IAS results (data.frame)

In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

Obtain IAS results (data.frame)

Description

Extracts (and filters) the summarized IAS results in form of a data.frame

Usage

getSmrdResultsDf(
  ias,
  eval = "ias_score",
  pval = "p_value_mean_adjusted",
  threshold_pval = 1,
  threshold_eval = 0,
  model_subset = NULL,
  model_remove = NULL
)

Arguments

threshold_pval, threshold_eval	Numeric value. Used to filter the output accordingly.
model_subset	Character value. Used as a regex to subset models. Use validModelNames() to obtain all model names that are known to SPATA2 and showModels() to visualize them.
model_remove	Character value. Used as a regex to remove models are not supposed to be included.
var_pval, var_eval	Character value. Specifies the p-value- and the evaluation variable based on which the thresholds are applied.

Value

Data.frame.

kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.