identifyTissueOutline: Identify tissue outline
In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis
identifyTissueOutline R Documentation
Identify tissue outline
Description
Identifies the barcode-spots that lie on the edge
of each tissue section and, thus, outline it. Requires identifyTissueSections()
results.
Usage
identifyTissueOutline(object)
Arguments
object
An object of class spata2.
Value
An updated spata2 object. The coordinates data.frame
as obtained by getCoordsDf() contains an additional, logical
variable named outline indicating whether the spot belongs
to the outline spots of the respective tissue section indicated by
variable section.
kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.
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| identifyTissueOutline | R Documentation |
Identify tissue outline
Description
Identifies the barcode-spots that lie on the edge
of each tissue section and, thus, outline it. Requires identifyTissueSections()
results.
Usage
identifyTissueOutline(object)
Arguments
object |
An object of class |
Value
An updated spata2 object. The coordinates data.frame
as obtained by getCoordsDf() contains an additional, logical
variable named outline indicating whether the spot belongs
to the outline spots of the respective tissue section indicated by
variable section.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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