API for kuppal2/xmsPANDA
R Package for Biomarker Discovery, Network, and Data Exploratory Analysis
| Global functions | |
|---|---|
| .get_data | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| E.W.k | Source code |
| QRILCimpute | Source code |
| RFimpute | Source code |
| ROCinternal.panda | Source code |
| W.k | Source code |
| calc_stats | Source code |
| calculate_concentration | Source code |
| check_model | Source code |
| compare.normalization | Source code |
| confusion_matrix2 | Source code |
| data_preprocess | Man page Source code |
| degree_eval | Source code |
| diffRank | Source code |
| diffexp | Man page Source code |
| diffexp.biomarkers1 | Source code |
| diffexp.child | Source code |
| diffexp.lite | Man page Source code |
| diffexpcoxph | Source code |
| diffexplmonewayanovarepeat | Source code |
| diffexplmreg | Source code |
| diffexplmregrepeat | Source code |
| diffexplmtwowayanova | Source code |
| diffexplmtwowayanovarepeat | Source code |
| diffexplogitreg | Source code |
| diffexponewayanova | Source code |
| diffexpsvmrfe | Source code |
| diffexpsvmrfemulticlass | Source code |
| diffrank_eval | Source code |
| do_MSTUS_norm | Source code |
| do_TIC_norm | Source code |
| do_cor | Source code |
| do_cubicspline_norm | Source code |
| do_cv | Source code |
| do_eigenms_norm | Source code |
| do_loess_norm | Source code |
| do_log2transform_norm | Source code |
| do_mars | Source code |
| do_mars_lmreg | Source code |
| do_mean | Source code |
| do_medcenter_norm | Source code |
| do_minmax | Source code |
| do_pamr | Source code |
| do_paretoscaling_norm | Source code |
| do_plsda | Source code |
| do_plsda_rand | Source code |
| do_quantile_norm | Source code |
| do_rangescaling_norm | Source code |
| do_rf | Source code |
| do_rf_boruta | Source code |
| do_rf_conditional | Source code |
| do_ridge_lasso_elasticnet | Source code |
| do_rsd | Source code |
| do_sva_norm | Source code |
| do_vsn_norm | Source code |
| do_vst_norm_count | Source code |
| do_wgcna | Man page Source code |
| do_znormtransform_norm | Source code |
| docortest | Source code |
| draw_keggmap | Source code |
| eig_norm2 | Source code |
| eig_norm2test | Source code |
| eval.class.acc1 | Source code |
| find.Overlapping.mzs | Source code |
| find.Unique.mzs | Source code |
| generate_distribution | Source code |
| generate_distribution_concentration | Source code |
| get.classification.accuracy | Man page |
| getCorchild | Source code |
| getSumreplicates | Source code |
| getSumreplicateschild | Source code |
| getVenn | Source code |
| get_VIPmulticomp | Source code |
| get_barplots | Source code |
| get_biorep.cor.plots | Source code |
| get_boxplot_colors | Source code |
| get_boxplots | Man page Source code |
| get_boxplots_child | Source code |
| get_bubbleplot | Source code |
| get_classification.accuracy | Source code |
| get_classification.accuracy.child | Source code |
| get_classification.accuracy_vold | Source code |
| get_data_summary | Source code |
| get_diagnosis | Source code |
| get_fcs | Man page Source code |
| get_fcs_child | Source code |
| get_fdr_adjusted_pvalue | Source code |
| get_fdr_adjusted_pvalue_child | Source code |
| get_forestplot | Source code |
| get_full_cormat | Source code |
| get_hca | Man page Source code |
| get_hca_child | Source code |
| get_hexcolors_for_palettes | Source code |
| get_individualsampleplots | Source code |
| get_kegg_compounds | Source code |
| get_kegg_compounds_brite | Source code |
| get_layout | Source code |
| get_lineplots | Source code |
| get_manhattanplots | Man page Source code |
| get_partial_cornet | Source code |
| get_pca | Man page Source code |
| get_pcascoredistplots | Man page Source code |
| get_pcascoredistplots_child | Source code |
| get_plscompvar | Source code |
| get_plsplots | Source code |
| get_roc | Man page Source code |
| get_spaghettiplots | Source code |
| get_survivalanalysis | Source code |
| get_survivalanalysis_univariate | Source code |
| get_survplot_adjustedcurve | Source code |
| get_volcanoplots | Man page Source code |
| ggadjustedcurves.average | Source code |
| ggadjustedcurves.conditional | Source code |
| ggadjustedcurves.marginal | Source code |
| ggadjustedcurves.single | Source code |
| imp_elim_proteins | Source code |
| make.formula.string | Source code |
| makeLMFormula | Source code |
| metabnet | Man page Source code |
| mmul | Source code |
| my.Psi | Source code |
| my.Psi.dash | Source code |
| mystar | Source code |
| mytriangle | Source code |
| nefs | Source code |
| outlier_detect | Source code |
| phi | Source code |
| plot.eigentrends | Source code |
| plot.eigentrends.start | Source code |
| plot.pairwise.correlation | Source code |
| plot.pairwise.correlation.bipartite | Source code |
| plotTukeyHSD1 | Source code |
| plot_graph | Source code |
| plot_sample_correlation_child | Source code |
| plsda_cv | Source code |
| quant | Source code |
| replace_outliers | Source code |
| runApp.xmsPANDA | Man page Source code |
| runApp.xmsPANDALite | Man page Source code |
| runlmreg | Source code |
| runlogitreg | Source code |
| scale_colour_Publication | Source code |
| scale_fill_Publication | Source code |
| stratify_by_class | Source code |
| sva.id | Source code |
| svm.getweights | Source code |
| svm_cv | Source code |
| theme_Publication | Source code |
| view_color_img | Source code |
| xmsPANDA | Man page |
| xmsPANDA-package | Man page |
