Files in kuppal2/xmsPANDA
Predictive And Network Discovery Analysis (xmsPANDA): R package for biomarker discovery and biomarker-driven network analysis for studying disease mechanisms using metabolomics

DESCRIPTION
NAMESPACE
R/.DS_Store
R/data_preprocess.R R/degree_eval.R R/diffexp.R R/diffexp.biomarkers.R R/diffexp.child.R R/diffexplmonewayanovarepeat.R R/diffexplmreg.R R/diffexplmtwowayanova.R R/diffexplmtwowayanovarepeat.R R/diffexponewayanova.R R/do_cor.R R/do_cv.R R/do_mars.R R/do_mean.R R/do_minmax.R R/do_pamr.R R/do_plsda.R R/do_plsda_rand.R R/do_rf.R R/do_rf_conditional.R R/do_rsd.R R/do_wgcna.R R/docortest.R R/find.Overlapping.mzs.R R/find.Unique.mzs.R R/getCorchild.R R/getSumreplicates.R R/getSumreplicateschild.R R/getVenn.R R/get_VIPmulticomp.R R/get_barplots.R R/get_boxplots.R R/get_boxplots_child.R R/get_classification.accuracy.R R/get_classification.accuracy.child.R R/get_full_cormat.R R/get_hca.R R/get_hca_child.R R/get_individualsampleplots.R R/get_lineplots.R R/get_manhattanplots.R R/get_partial_cornet.R R/get_pca.R R/get_pcascoredistplots.R R/get_pcascoredistplots_child.R R/get_plscompvar.R R/get_plsplots.R R/get_roc.R R/get_volcanoplots.R R/metabnet.R R/plotEigengeneNetworks_custom.R R/plsda_cv.R R/replace_outliers.R R/runlmreg.R R/svm.weights.R R/svm_cv.R R/svmrfeFeatureRanking.R R/svmrfeFeatureRankingForMulticlass.R
examples_and_manual/.DS_Store
examples_and_manual/Example_Rscripts/.DS_Store
examples_and_manual/Example_Rscripts/ex_data_preprocessing.R examples_and_manual/Example_Rscripts/ex_get_boxplots.R examples_and_manual/Example_Rscripts/ex_get_classification.accuracy.R examples_and_manual/Example_Rscripts/ex_get_hca_script.R examples_and_manual/Example_Rscripts/ex_get_one-way_hca_script.R examples_and_manual/Example_Rscripts/ex_network_analysis.R examples_and_manual/Example_Rscripts/ex_one_way_anova_repeatedmeasures.R examples_and_manual/Example_Rscripts/ex_regression.r examples_and_manual/Example_Rscripts/ex_two_or_more_class_comparison.R examples_and_manual/Example_Rscripts/ex_two_way_anova_repeatedmeasures.r
examples_and_manual/Example_feature_table_and_classlabels/.DS_Store
examples_and_manual/Example_feature_table_and_classlabels/classlabels_multiclass_comparison.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_multiclass_comparison_withcovariates.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_one_factor_repeatedmeasures.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_one_factor_repeatedmeasures_2timepoints.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_regression.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_regression_withcovariates.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_two_factor_repeatedmeasures.txt
examples_and_manual/Example_feature_table_and_classlabels/classlabels_two_way_anova.txt
examples_and_manual/Example_feature_table_and_classlabels/feature_table_one_or_two_factor_analysis.txt
examples_and_manual/Mzmine_smokers_nonsmokers_PANDA.txt
examples_and_manual/classlabels.txt
examples_and_manual/xmsPANDA-manual.pdf examples_and_manual/xmsPANDA_example_script.R
examples_and_manual/xmsPANDAv1.0.7_installation_instructions.txt
man/.DS_Store
man/data_preprocess.Rd man/diffexp.Rd man/do_wgcna.Rd man/get_boxplots.Rd man/get_classification.accuracy.Rd man/get_hca.Rd man/get_manhattanplots.Rd man/get_pca.Rd man/get_pcascoredistplots.Rd man/get_roc.Rd man/get_volcanoplots.Rd man/metabnet.Rd man/xmsPANDA_v1.0.7.5-package.Rd
kuppal2/xmsPANDA documentation built on May 3, 2018, 2:04 p.m.