plot: Plot 'lmm2met' object
In kwanjeeraw/lmm2met: Linear mixed-effects modeling to improve clinical metabolomics information
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
plot lmm2met object.
Usage
1
plot.lmm2met(x, type, fix, ...)
Arguments
x
lmm2met object from fitLmm
type
character; type of plot. See Details
fix
character; name of a fixed effect, if type ='fitted'
...
other arguments of plot function
Details
Types of plots include:
residual - residual and a normal Q-Q plot
randeff - random effects plot
fixeff - heatmaps of coefficients and significance levels
fitted - plots of measured variables before and after LMM fitting
chisq - html table of p-values from chi-square test
coeff - html table of fixed-effects coefficients
Value
plot
Author(s)
Kwanjeera W kwanjeera.wan@mahidol.ac.th
References
https://cran.r-project.org/web/packages/lme4/index.html
Examples
1
2
3
#fitMet = fitLmm(fix=c('Sex','Age','BMI','Stage','Location','Tissue'),
#random='(1|Id)', data=adipose, start=10, end=14)
#plot(fitMet, type='residual')
kwanjeeraw/lmm2met documentation built on May 14, 2019, 3:07 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
plot lmm2met object.
Usage
1 | plot.lmm2met(x, type, fix, ...)
|
Arguments
x |
|
type |
character; type of plot. See Details |
fix |
character; name of a fixed effect, if |
... |
other arguments of |
Details
Types of plots include:
residual - residual and a normal Q-Q plot
randeff - random effects plot
fixeff - heatmaps of coefficients and significance levels
fitted - plots of measured variables before and after LMM fitting
chisq - html table of p-values from chi-square test
coeff - html table of fixed-effects coefficients
Value
plot
Author(s)
Kwanjeera W kwanjeera.wan@mahidol.ac.th
References
https://cran.r-project.org/web/packages/lme4/index.html
Examples
1 2 3 | #fitMet = fitLmm(fix=c('Sex','Age','BMI','Stage','Location','Tissue'),
#random='(1|Id)', data=adipose, start=10, end=14)
#plot(fitMet, type='residual')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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