diversity_measures: Diversity measures implemented

In kylebittinger/abdiv: Alpha and Beta Diversity Measures

Diversity measures implemented

Description

The diversity functions offered in abdiv are organized based on the function signature.

Usage

alpha_diversities

beta_diversities

phylogenetic_alpha_diversities

phylogenetic_beta_diversities

Format

Four objects of class character.

An object of class character of length 16.

An object of class character of length 42.

An object of class character of length 1.

An object of class character of length 10.

Details

The following character vectors are provided:

alpha_diversities

All non-phylogenetic alpha diversity measures. These functions take a single numeric vector as an argument.

beta_diversities

All non-phylogenetic beta diversity measures. These functions take two numeric vectors as arguments.

phylogenetic_alpha_diversities

There is only one phylogenetic alpha diversity measure implemented, but we use the plural to be consistent with the other vectors. This function takes a numeric vector, a phylogenetic tree object, and optionally a character vector of species labels.

phylogenetic_beta_diversities

Phylogenetic measures of beta diversity. These functions take two numeric vectors, a phylogenetic tree object, and optionally a character vector of species labels.

kylebittinger/abdiv documentation built on Nov. 22, 2023, 8:16 p.m.