get_cohorts: Multi-annual model of infection and vaccination (version 2)

In kylieainslie/MoreVac: Modelling Repeat Vaccination

Multi-annual model of infection and vaccination (version 2)

Description

This function gets attack rates for a rolling cohort.

Usage

get_cohorts(
  inf_history,
  vac_history,
  ages,
  enrollment_start_year = 2000,
  ncohorts = 10,
  total_year_range,
  length_study = 18,
  write.file = FALSE,
  file = "test"
)

Arguments

inf_history	sparse matrix of infection histories for each person
vac_history	sparse matrix of vaccination history for each person
ages	matrix of ages of each person for every year
enrollment_start_year	year for cohort enrollment to start (YYYY format)
ncohorts	number of cohorts to enroll
total_year_range	vector of years to run simulations over
length_study	number of years to follow each cohort
write.file	logical. if true, the infection histories and vaccination histories are written to the working directory
file	character string used as the prefix for the output file if write.file = TRUE

Value

data frame of attack rates within the cohort by year

kylieainslie/MoreVac documentation built on March 22, 2022, 8:49 a.m.