Man pages for kylieainslie/vacamole
Deterministic Age-Structured SEIR model with Vaccination
| age_struct_seir_ode | Age-structured SEIR ODE model of vaccination with 2 doses and... |
| calc_ve_w_waning | Calculate amount of vaccine waning |
| choose_contact_matrix | Determine contact matrix based on thresholds of cases or IC... |
| convert_contact_matrices | Convert contact matrices to transmission matrices |
| convert_vac_schedule | convert cumulative vaccination schedule to non-cumulative... |
| forward_sim_func_wrap | Wrapper function to perform forward simulations |
| get_foi | Calculate force of infection |
| get_transmission_matrix | Convert contact matrix to transmission matrix |
| likelihood_func | Likelihood function for fitting SEIR model to daily case data |
| model_run_wrapper | Function wrapper to run model for multiple time windows with... |
| my_rmultinom | Postprocess output from age-structured SEIR ODE model of... |
| postprocess_age_struct_model_output | Postprocess output from age-structured SEIR ODE model of... |
| stochastic_age_struct_seir_ode | Stochastic Age-structured SEIR ODE model of vaccination with... |
| summarise_results | Summarise output from SEIR model for plotting |
| vac-a-mole-package | A short title line describing what the package does |
| wide_to_long | Convert data from wide to long |
| wrangle_results | Post-process raw results from model run |
