choose_contact_matrix: Determine contact matrix based on thresholds of cases or IC...

In kylieainslie/vacamole: Deterministic Age-Structured SEIR model with Vaccination

Determine contact matrix based on thresholds of cases or IC admissions

Description

Determine contact matrix based on thresholds of cases or IC admissions

Usage

choose_contact_matrix(
  times,
  params,
  criteria,
  flag_relaxed,
  flag_very_relaxed,
  flag_normal,
  keep_fixed
)

Arguments

times	vector of time points
params	list of parameter values
criteria	criteria by which to change contact matrix. User can choose between a number of cases per day or a number of IC admissions.
flag_relaxed	an integer value that becomes non-zero (positive) when the contact matrix consistent with "relaxed" non-pharmaceutical interventions is being used.
flag_very_relaxed	an integer value that becomes non-zero (positive) when the contact matrix consistent with "very relaxed" non-pharmaceutical interventions is being used.
flag_normal	an integer value that becomes non-zero (positive) when the contact matrix consistent with normal (pre-pandemic) contact patterns is being used.
keep_fixed	logical. if TRUE the contact matrix stays fixed over the entire simulation period

Value

List of summary results

kylieainslie/vacamole documentation built on Oct. 15, 2024, 10:17 a.m.