vignettes/CromwellClient.R

In labbcb/CromwellClient: R package for consuming Cromwell API

## ----setup, include = FALSE----------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----submit, eval=FALSE--------------------------------------------------
#  host <- "http://localhost:8000"
#  workflow <- system.file("extdata/workflow.wdl", package = "CromwellClient")
#  inputs <- system.file("extdata/inputs.json", package = "CromwellClient")
#  job <- submit(host, workflow, inputs)
#  job

## ----status, eval=FALSE--------------------------------------------------
#  status(job)

## ----outputs, eval=FALSE-------------------------------------------------
#  outputs(job)
#  as.data.frame(outputs(job))

## ----logs, eval=FALSE----------------------------------------------------
#  logs(job)
#  as.data.frame(logs(job))

## ----timming, eval=FALSE-------------------------------------------------
#  timming(job)

## ----abort, eval=FALSE---------------------------------------------------
#  abort(job)

## ----query, eval=FALSE---------------------------------------------------
#  query(host)

## ----engineStats, eval=FALSE---------------------------------------------
#  engineStats(host)

## ----engineVersion, eval=FALSE-------------------------------------------
#  engineVersion(host)

## ----engineStatus, eval=FALSE--------------------------------------------
#  engineStatus(host)

## ----sessionInfo, echo=FALSE---------------------------------------------
sessionInfo()