evalGeneSet: Evaluate a single gene set

In labsyspharm/DRIAD: Drug Repurposing In Alzheimer's Disease

Description

Evaluates a gene set of interest in the context of a given dataset

Usage

evalGeneSet(gsi, XY, lP, nBK = 0, method = "lgr")

Arguments

gsi	gene set of interest, provided as a character vector
XY	dataset, as loaded by prepareTask()
lP	list of pairs for cross-validation, as generated by preparePairs()
nBK	number of background sets that should be generated alongside the gene set of interest
method	one of "lgr", "svm, xgb", "nn" for logistics regression, support vector machines, xgboost and neural nets, respectively

Value

A data frame of results, where the first row corresponds to the gene set of interest, and all subsequent rows correspond to the generated background sets

labsyspharm/DRIAD documentation built on Jan. 6, 2022, 3:04 p.m.