evalGeneSets: Evaluate multiple gene sets

Description Usage Arguments Value

View source: R/lpocv.R

Description

Evaluates multiple gene sets after matching them up against a given dataset

Usage

1
evalGeneSets(lGSI, XY, lP, nBK = 0, method = "lgr", rs = 100)

Arguments

lGSI

list of character vectors, each encapsulating a gene set of interest (GSI)

XY

dataset, as loaded by prepareTask()

lP

list of pairs for cross-validation, as generated by preparePairs()

nBK

number of background sets to generate for each GSI

method

one of "lgr", "svm, xgb", "nn" for logistics regression, support vector machines, xgboost and neural nets, respectively

rs

random seed to allow for reproducibility

Value

A data frame of results, with one row per GSI


labsyspharm/DRIAD documentation built on Jan. 6, 2022, 3:04 p.m.