Description Usage Arguments Value
Evaluates multiple gene sets after matching them up against a given dataset
1 | evalGeneSets(lGSI, XY, lP, nBK = 0, method = "lgr", rs = 100)
|
lGSI |
list of character vectors, each encapsulating a gene set of interest (GSI) |
XY |
dataset, as loaded by prepareTask() |
lP |
list of pairs for cross-validation, as generated by preparePairs() |
nBK |
number of background sets to generate for each GSI |
method |
one of "lgr", "svm, xgb", "nn" for logistics regression, support vector machines, xgboost and neural nets, respectively |
rs |
random seed to allow for reproducibility |
A data frame of results, with one row per GSI
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