imaap_prob: Probablility calculation for the user defined cell types.
In labsyspharm/IMAAP: Annotation and Analysis of Multiplexed Imaging Data
Description
Usage
Arguments
Value
Description
Takes in the probability of expression for individual marker expression and calculates the probability for cell types based on the user defined parameters.
Usage
1
imaap_prob(marker_prob, cheat_sheet)
Arguments
marker_prob
Probabilty of the expression of individual markers calculared using the gaussian mixture modelling function- imaap_model
cheat_sheet
A CSV file listing the the markers that are used to define a cell type. It needs to follow the defined template.
Value
Probability scores for each cell type of interest.
labsyspharm/IMAAP documentation built on Nov. 4, 2019, 4:15 p.m.
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Description Usage Arguments Value
Description
Takes in the probability of expression for individual marker expression and calculates the probability for cell types based on the user defined parameters.
Usage
1 | imaap_prob(marker_prob, cheat_sheet)
|
Arguments
marker_prob |
Probabilty of the expression of individual markers calculared using the gaussian mixture modelling function- |
cheat_sheet |
A CSV file listing the the markers that are used to define a cell type. It needs to follow the defined template. |
Value
Probability scores for each cell type of interest.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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