Description Usage Arguments Value Examples
Build a gatingObj from a gatingSet
1 2 3 |
gs |
- a GatingSet object. |
annotation |
- annotation object. if NULL, will try to pull from phenoData in gs@data |
populations |
- set of populations to display in data. Used in Shiny modules |
imageDir |
- image directory for making all gating images. Will be created if it doesn't exist. |
mapVar |
- a named variable that will map to populationTable. |
objId |
- unique ID for this object. Used in shiny modules to avoid namespace collisions. |
makeGraphs |
- Boolean that sets whether the function will generate all gating images The column to map in popTable is 'name'. Default value is FALSE. |
gatingObj
1 2 3 4 5 6 7 8 | gsFile <- system.file("extdata", "gvHDgs", package="flowDashboard")
gs <- load_gs(gsFile)
tmpDir <- tempdir()
GO <- GOFromGatingSet(gs, imageDir=tmpDir, makeGraphs=TRUE)
GO
annot <- pData(gs@data@phenoData)
GO <- GOFromGatingSet(gs, annotation=annot, makeGraphs=FALSE)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.