getCladeMonophyly: Monophyly statistics of a clade in a list of trees
Description Usage Arguments Value Warning See Also
Description
Function that returns the probsbility of the clade defined by the tips in tips
to be monophyletic in a list of trees. If the input tree is a single phylogenetic tree
of class "phylo" the function returns 0 or 1. If the input is a "multiPhylo" object
then the proportion of trees in which the clade is monophyletic is returned. This
function uses the is.monophyletic function.
Usage
1 | getCladeMonophyly(trees, tips, ...)
|
Arguments
trees |
A single tree of class "phylo" or a set of trees of class "multiPhylo" |
tips |
A vector of tips in the tree(s). Could either be numeric (tip numbers) or a character vector (taxon names). |
Value
A floating point number between 0 and 1 giving the probability that the clade is monophyletic.
Warning
If any of the tips are not present in any of the trees the function will crash.
