getCladeMonophyly: Monophyly statistics of a clade in a list of trees
In laduplessis/beastio: Functions for pre- and post-processing of BEAST and BEAST2 files.
Description
Usage
Arguments
Value
Warning
See Also
Description
Function that returns the probsbility of the clade defined by the tips in tips
to be monophyletic in a list of trees. If the input tree is a single phylogenetic tree
of class "phylo" the function returns 0 or 1. If the input is a "multiPhylo" object
then the proportion of trees in which the clade is monophyletic is returned. This
function uses the is.monophyletic function.
Usage
1
getCladeMonophyly(trees, tips, ...)
Arguments
trees
A single tree of class "phylo" or a set of trees of class "multiPhylo"
tips
A vector of tips in the tree(s). Could either be numeric (tip numbers) or
a character vector (taxon names).
Value
A floating point number between 0 and 1 giving the probability that the clade is
monophyletic.
Warning
If any of the tips are not present in any of the trees the function will crash.
See Also
laduplessis/beastio documentation built on Dec. 14, 2021, 7:04 p.m.
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Description Usage Arguments Value Warning See Also
Description
Function that returns the probsbility of the clade defined by the tips in tips
to be monophyletic in a list of trees. If the input tree is a single phylogenetic tree
of class "phylo" the function returns 0 or 1. If the input is a "multiPhylo" object
then the proportion of trees in which the clade is monophyletic is returned. This
function uses the is.monophyletic function.
Usage
1 | getCladeMonophyly(trees, tips, ...)
|
Arguments
trees |
A single tree of class "phylo" or a set of trees of class "multiPhylo" |
tips |
A vector of tips in the tree(s). Could either be numeric (tip numbers) or a character vector (taxon names). |
Value
A floating point number between 0 and 1 giving the probability that the clade is monophyletic.
Warning
If any of the tips are not present in any of the trees the function will crash.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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