getHPD.boa: Calculate HPD of a parameter
In laduplessis/beastio: Functions for pre- and post-processing of BEAST and BEAST2 files.
Description
Usage
Arguments
Details
Value
Description
Get HPD of a posterior sample
Usage
1
getHPD.boa(data, alpha = 0.05, includeMedian = TRUE)
Arguments
data
The samples from the posterior.
alpha
The confidence level.
includleMedian
If FALSE only return the HPD limits, and not the median as well.
Details
Uses Chen and Shao algorithm as implemented in boa package.
Value
c(lower, median, upper)
laduplessis/beastio documentation built on Dec. 14, 2021, 7:04 p.m.
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Description Usage Arguments Details Value
Description
Get HPD of a posterior sample
Usage
1 | getHPD.boa(data, alpha = 0.05, includeMedian = TRUE)
|
Arguments
data |
The samples from the posterior. |
alpha |
The confidence level. |
includleMedian |
If FALSE only return the HPD limits, and not the median as well. |
Details
Uses Chen and Shao algorithm as implemented in boa package.
Value
c(lower, median, upper)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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