RNAScope_prop | R Documentation |
Cell type proportion estimates from high quality images from Huuki-Myers et al., bioRxiv, 2024, doi: https://doi.org/10.1101/2024.02.09.579665.
RNAScope_prop
A data.frame object.
11.49 kB
SAMPLE_ID
: DLPFC Tissue block + RNAScope combination.
Sample
: DLFPC Tissue block (Donor BrNum + DLPFC position).
Combo
: RNAScope probe combination, either "Circle" marking cell types Astro
Endo, Inhib, or "Star" marking Excit, Micro, and OligoOPC.
cell_type
: The cell type measured.
Confidence
: Image confidence, this dataset has been filtered to the high & Ok confidence images.
n_cell
: the number of cells counted for the Sample and cell type.
prop
: the calculated cell type proportion from n_cell.
n_cell_sn
: number of nuclei in the corresponding snRNA-seq data.
prop_sn
: cell type proportion from the snRNA-seq data.
https://github.com/LieberInstitute/brainstorm/blob/master/data-raw/RNAScope.R
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