lanagarmire/Granatum: Graphical Single-Cell RNA-Seq Analysis Pipeline for Genomics Scientists

The pipeline will graphically guide you through the analysis of scRNA-seq data, starting from expression and metadata tables. It uses a comprehensive set of modules for quality control / normalization, clustering, differential gene expression / enrichment analysis, protein network interaction visualization, and cell pseudo-time pathway construction.

install.packages("remotes")
remotes::install_github("lanagarmire/Granatum")