Man pages for lanagarmire/NMFEM
Non-negative Matrix Factorization analysis and module generation for scRNA-Seq data
| construct_weighted_graph_from_edge_list | Contruct weighted graph using node weights |
| fpkm | FPKM table of distal mouse lung epithelial cells from two... |
| generate_spinglass_communities | Generate communities using Spin Glass algorithm |
| get_monte_carlo_simulation_p_values | Do Monte Carlo simulation |
| GO_analysis | Gene Ontology (GO) term analysis |
| hppi | Human Protein Protein Interaction Network |
| KEGG_analysis | KEGG pathway analysis |
| leading_genes | Leading genes of distal mouse lung epithelial cells from two... |
| mppi | Mouse Protein Protein Interaction Network |
| nmf_subpopulation | Detect subpopulations using NMF |
| phe | Grouping vector of distal mouse lung epithelial cells from... |
| plot_module_graph | Plot module graph |
| spinglass_procedure | Generate modules from seed genes using Spinglass community... |
| toy | A toy dataset |
