Files in lanagarmire/NMFEM
Non-negative Matrix Factorization analysis and module generation for scRNA-Seq data
.Rbuildignore
.gitignore
DESCRIPTION
Makefile
NAMESPACE
R/data.R
R/module_generation.R
R/nmf_subpopulation.R
README.md
build.R
data/fpkm.rda
data/hppi.rda
data/leading_genes.rda
data/mppi.rda
data/phe.rda
data/toy.rda
data_raw/toy.R
man/GO_analysis.Rd
man/KEGG_analysis.Rd
man/construct_weighted_graph_from_edge_list.Rd
man/fpkm.Rd
man/generate_spinglass_communities.Rd
man/get_monte_carlo_simulation_p_values.Rd
man/hppi.Rd
man/leading_genes.Rd
man/mppi.Rd
man/nmf_subpopulation.Rd
man/phe.Rd
man/plot_module_graph.Rd
man/spinglass_procedure.Rd
man/toy.Rd
vignettes/tutorial.Rmd
vignettes/tutorial.bib
vignettes/tutorial.html
