getRTvsRB_FPKM: Calculate the rate of transcription and translation.

In lapinskim/shinyScatterplot: Polysome Association Dynamics Plotting

Description

Integrates the count from multiple sequencing experiments to produce the rates of transcription and translation in contrast to the egg developmental stage.

Usage

getRTvsRB_FPKM(stage, totalCounts, boundCounts, unboundCounts, totalFPKM,
  cluster, cutoff = 1)

Arguments

stage	Developmental stage; string.
totalCounts	Read counts from total RNA sequencing experiment.
boundCounts	Read counts form polysome profiling bound fraction sequencing.
unboundCounts	Read counts form polysome profiling unbound fraction sequencing.
totalFPKM	FPKM values from total RNA sequencing experiment.
cluster	Clustering information for RNA fractions.
cutoff	FPKM cutoff value.

Value

A data frame with rates and clustering information

See Also

Materials and Methods, Winata CL, Development, 11 December 2017 http://dev.biologists.org/content/early/2017/12/08/dev.159566

lapinskim/shinyScatterplot documentation built on May 15, 2019, 12:47 p.m.