runPlot: Run Shiny scatterplot application

In lapinskim/shinyScatterplot: Polysome Association Dynamics Plotting

Description

Launch Shiny application that displays the interactive scatterplot.

Usage

runPlot()

Details

Recreation of Figure 2. from the publication Cytoplasmic polyadenylation-mediated translational control of maternal mRNAs directs maternal to zygotic transition, Winata CL, Development, 11 December 2017 http://dev.biologists.org/content/early/2017/12/08/dev.159566

Measurements of transcription (∆TS) and translation (∆TL) rates were obtained as a fraction of total and polysome-bound expression values at particular stages compared with the egg stage as baseline. Translational regulation is defined as a non-linear relationship between transcription and translation rates.

transcription rate (∆TS) = total(stage x) / total(egg)

translation rate(∆TL) = polysome(stage x) / polysome(egg)

See Also

Winata CL, Development, 11 December 2017 http://dev.biologists.org/content/early/2017/12/08/dev.159566

Examples

## Run in interactive session only
if (interactive()) {
    runPlot()
}

lapinskim/shinyScatterplot documentation built on May 15, 2019, 12:47 p.m.