Files in laurabiggins/GOcategoryStats
Provides statistics for Gene Ontology categories (Title Case)
.Rbuildignore
.gitignore
DESCRIPTION
GO_summary_373_datasets.txt
GOcategoryStats.Rproj
LICENSE
NAMESPACE
R/datasets.R
R/hello.R
R/overrepresentation_test.r
R/plots.R
R/process_files.r
R/utilities.R
R/wrappers.r
README.md
data/GC_results.rda
data/Mus_musculus.GRCm38.94_gene_info.txt
data/all_go_categories.rda
data/all_go_results.rda
data/all_go_results_closest_gene.rda
data/bg_genes.rda
data/biased_transcripts.rda
data/chr11.txt
data/chr12.txt
data/chr13.txt
data/chr17.txt
data/chr18.txt
data/chr19.txt
data/chr2.txt
data/chr6.txt
data/chr7.txt
data/chrMT.txt
data/chrY.txt
data/chr_results.rda
data/chromosomes.rda
data/closest_gene.rda
data/closest_gene_lists.rda
data/closest_genes.txt
data/gathered_cats.rda
data/gene_length_results.rda
data/genes_1.rda
data/go_categories.rda
data/high_transcripts.txt
data/length_results.rda
data/long.txt
data/lowGC_results.rda
data/low_GC.txt
data/m_musculus.rda
data/public_data_tidied.txt
data/random_genes.rda
data/short.txt
data/suspect_categories.txt
data/suspect_categories_archive.txt
data/suspects1.rda
data/suspects_gene_length.rda
data/suspects_high_transcripts.rda
data/suspects_lowGC.rda
data/top_200.rda
data/transcript_results.rda
data/very_high_transcripts.txt
data/very_long.txt
data/very_low_GC.txt
data/very_short.txt
data/vv_high_transcripts.txt
data/vv_low_GC.txt
doc/0.gene_list_preprocessing.Rmd
doc/0.gene_list_preprocessing.html
doc/0.gene_list_preprocessing.pdf
doc/0.gene_list_preprocessing.tex
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genes1
man/bar_plot.Rd
man/bg_genes.Rd
man/chromosomes.Rd
man/clean_text.Rd
man/density_plot.Rd
man/extract_gene_names.Rd
man/genes_1.Rd
man/get_GO_info.Rd
man/get_GO_sets.Rd
man/get_chr_percentage.Rd
man/get_chromosomes.Rd
man/get_count_matrix.Rd
man/get_lengths.Rd
man/hello.Rd
man/import_GTF.Rd
man/m_musculus.Rd
man/overrep_test.Rd
man/parse_GTF_info.Rd
man/process_GMT.Rd
man/remove_duplicates.Rd
man/suspects1.Rd
