suspects1: Gene set functional categories.
In laurabiggins/GOcategoryStats: Provides statistics for Gene Ontology categories (Title Case)
Description
Usage
Format
Details
Source
Description
A dataset containing genes grouped in to functional sets. Each functional
group is named. This dataset is processed from a gmt file.
Filtering for reasonable sized categories has been turned off. This set of
categories should mainly be used for testing for biases.
Usage
1
Format
A named list with x number of components
Details
all_go_categories <- process_GMT(file_location, min_genes = 3, max_genes = 500000)
Gene set functional categories.
A dataset containing genes grouped in to functional sets. Each functional
group is named. This dataset is processed from a gmt file.
The
all_go_categories <- process_GMT(file_location)
Set of suspect gene ontology categories
These categories are derived from an analysis of public datasets ....
Essentially these GO categories appeared more than expected when running GO
overrepresentation tests
Source
http://download.baderlab.org/EM_Genesets/current_release/Mouse/symbol/Mouse_GO_AllPathways_no_GO_iea_February_01_2019_symbol.gmt
http://download.baderlab.org/EM_Genesets/current_release/Mouse/symbol/Mouse_GO_AllPathways_no_GO_iea_February_01_2019_symbol.gmt
laurabiggins/GOcategoryStats documentation built on Oct. 27, 2019, 11:36 a.m.
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Description Usage Format Details Source
Description
A dataset containing genes grouped in to functional sets. Each functional group is named. This dataset is processed from a gmt file. Filtering for reasonable sized categories has been turned off. This set of categories should mainly be used for testing for biases.
Usage
1 |
Format
A named list with x number of components
Details
all_go_categories <- process_GMT(file_location, min_genes = 3, max_genes = 500000) Gene set functional categories.
A dataset containing genes grouped in to functional sets. Each functional group is named. This dataset is processed from a gmt file. The
all_go_categories <- process_GMT(file_location) Set of suspect gene ontology categories
These categories are derived from an analysis of public datasets .... Essentially these GO categories appeared more than expected when running GO overrepresentation tests
Source
http://download.baderlab.org/EM_Genesets/current_release/Mouse/symbol/Mouse_GO_AllPathways_no_GO_iea_February_01_2019_symbol.gmt
http://download.baderlab.org/EM_Genesets/current_release/Mouse/symbol/Mouse_GO_AllPathways_no_GO_iea_February_01_2019_symbol.gmt
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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