extract_gene_names: Extract gene names from GTF
In laurabiggins/GOcategoryStats: Provides statistics for Gene Ontology categories (Title Case)
Description
Usage
Arguments
Value
Examples
View source: R/process_files.r
Description
Parse info column from GTF file to extract gene names
Usage
1
extract_gene_names(info_column)
Arguments
info_column
character vector from the info column of a gtf file, probably the output from process_GTF, in the
format "gene_id "ENSMUSG00000102693"; gene_version "1"; gene_name "4933401J01Rik"; gene_source "havana"; gene_biotype "TEC"
Value
A data frame containing the gene sets of interest along with information on
gene lengths etc. http://rstudio.com some more text process_GMT
Examples
1
x <- extract_gene_names(m_musculus$info)
laurabiggins/GOcategoryStats documentation built on Oct. 27, 2019, 11:36 a.m.
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Description Usage Arguments Value Examples
View source: R/process_files.r
Description
Parse info column from GTF file to extract gene names
Usage
1 | extract_gene_names(info_column)
|
Arguments
info_column |
character vector from the info column of a gtf file, probably the output from |
Value
A data frame containing the gene sets of interest along with information on gene lengths etc. http://rstudio.com some more text process_GMT
Examples
1 | x <- extract_gene_names(m_musculus$info)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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