plotJack | R Documentation |
Create a ggplot2
plot based on a jack knifed biodyn and plots
time series of biomass and harvest rate.
The basic object can then be modified by adding ggpot2 layers.
plotJack(x, ncol = 1)
x |
an object of class |
ncol |
number of colums in plot panel |
plotJack
an ggplot2
object
## Not run:
#simulate an object with known properties
bd=sim()
bd=window(bd,end=49)
#simulate a proxy for stock abundance
cpue=(stock(bd)[,-dims(bd)$year]+stock(bd)[,-1])/2
cpue=rlnorm(1,log(cpue),.2)
#set parameters
setParams(bd) =cpue
setControl(bd)=params(bd)
control(bd)[3:4,"phase"]=-1
#fit
bd=fit(bd,cpue)
bdJK=fit(bd,jackknife(cpue))
plotJack(bdJK)
bd =randJack(100,bd)
## End(Not run)
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