starve-class | R Documentation |
An S4 class describing a starve model.
## S4 method for signature 'starve'
settings(x)
## S4 method for signature 'starve'
tracing(x)
## S4 method for signature 'starve'
time_effects(x)
## S4 replacement method for signature 'starve'
time_effects(x) <- value
## S4 method for signature 'starve'
pg_re(x)
## S4 replacement method for signature 'starve'
pg_re(x) <- value
## S4 method for signature 'starve'
tg_re(x)
## S4 replacement method for signature 'starve'
tg_re(x) <- value
## S4 method for signature 'starve'
random_effects(x)
## S4 method for signature 'starve'
persistent_graph(x)
## S4 method for signature 'starve'
transient_graph(x)
## S4 method for signature 'starve'
graph(x)
## S4 method for signature 'starve'
covariance_function(x)
## S4 replacement method for signature 'starve'
covariance_function(x) <- value
## S4 method for signature 'starve'
space_parameters(x)
## S4 replacement method for signature 'starve'
space_parameters(x) <- value
## S4 method for signature 'starve'
time_parameters(x)
## S4 replacement method for signature 'starve'
time_parameters(x) <- value
## S4 method for signature 'starve'
dat(x)
## S4 replacement method for signature 'starve'
dat(x) <- value
## S4 method for signature 'starve'
data_predictions(x)
## S4 replacement method for signature 'starve'
data_predictions(x) <- value
## S4 method for signature 'starve'
response_distribution(x)
## S4 replacement method for signature 'starve'
response_distribution(x) <- value
## S4 method for signature 'starve'
response_parameters(x)
## S4 replacement method for signature 'starve'
response_parameters(x) <- value
## S4 method for signature 'starve'
link_function(x)
## S4 replacement method for signature 'starve'
link_function(x) <- value
## S4 method for signature 'starve'
fixed_effects(x)
## S4 replacement method for signature 'starve'
fixed_effects(x) <- value
## S4 method for signature 'starve'
distance_units(x)
## S4 replacement method for signature 'starve'
distance_units(x) <- value
## S4 method for signature 'starve'
formula(x)
## S4 replacement method for signature 'starve'
formula(x) <- value
## S4 method for signature 'starve'
parameters(x)
## S4 replacement method for signature 'starve,parameters'
parameters(x) <- value
## S4 method for signature 'starve'
convergence(x)
## S4 method for signature 'starve'
timing(x)
## S4 method for signature 'starve'
show(object)
x |
An object |
value |
A replacement value |
object |
An object |
settings(starve)
: Get model settings
tracing(starve)
: Get tracing information, see tracing.
time_effects(starve)
: Get temporal random effects
time_effects(starve) <- value
: Set temporal random effects
pg_re(starve)
: Get persistent graph random effects
pg_re(starve) <- value
: Set spatio-temporal random effects
tg_re(starve)
: Get transient graph random effects
tg_re(starve) <- value
: Set transient graph random effects
random_effects(starve)
: Get list containing the persistent graph random
effects and the transient graph random effects.
persistent_graph(starve)
: Get persistent graph
transient_graph(starve)
: Get transient graph
graph(starve)
: Get a list containing the persistent and transient graphs
covariance_function(starve)
: Get covariance function
covariance_function(starve) <- value
: Set covariance function(s). Run
get_starve_distributions("covariance") for valid covariance functions.
Setting the covariance function also overwrites the spatial parameters.
space_parameters(starve)
: Get spatial parameters
space_parameters(starve) <- value
: Set spatial parameters
time_parameters(starve)
: Get time parameters
time_parameters(starve) <- value
: Set time parameters
dat(starve)
: Get data including response variables, time indices,
locations, covariates, etc.
dat(starve) <- value
: Set data. Warning: if you want to add new
rows you must give each additional row a value in the graph_idx column,
or create a new object from scratch.
data_predictions(starve)
: Get data predictions, a long_stars object
with the data (see dat
) and associated random effect
predictions.
data_predictions(starve) <- value
: Set data predictions
response_distribution(starve)
: Get the response distribution(s)
response_distribution(starve) <- value
: Set the response distribution(s). Run
get_starve_distributions("distribution") for valid options.
Setting the response distribution also overwrites the response
parameters and link function(s).
response_parameters(starve)
: Get response distribution parameters
response_parameters(starve) <- value
: Set response distribution parameters
link_function(starve)
: Get link function(s)
link_function(starve) <- value
: Set link function(s). Run
get_starve_distributions("link") for valid link functions.
fixed_effects(starve)
: Get fixed effect parameters
fixed_effects(starve) <- value
: Set fixed effect parameters
distance_units(starve)
: Get distance units used for the model
distance_units(starve) <- value
: Set distance units used for the model
formula(starve)
: Get formula used for model
formula(starve) <- value
: Set formula used for the model
parameters(starve)
: Get all model parameters as a parameters object
parameters(x = starve) <- value
: Set all model parameters with a new
parameters object
convergence(starve)
: Get convergence message from optimizer
timing(starve)
: Get all timing information, see tracing
show(starve)
: Print method
process
A process object.
observations
An observations object.
settings
A settings object.
strv_prepare
Other starve_classes:
TMB_out-class
,
dag-class
,
long_stars-class
,
observation_parameters-class
,
observations-class
,
parameters-class
,
process-class
,
process_parameters-class
,
settings-class
,
tracing-class
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