Reference genotypes for NA12878 and NA19240, as called by the HapMap project, and the Broad GATK project.
A VRanges with the genotypes for NA12878 and NA19240 from the HapMap pilot project and the Broad/GATK calling of NA12878. The genotypes, stored in the "freq." columns, are represented by the alt frequency, so 0/0.5/1 for hom-ref/het/hom-alt. The "expected.freq" column indicates the alt frequency expected in the 50/50 mixture.
The HapMap Pilot and Broad GATK projects.
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