geno: Reference genotypes

In lawremi/VariantToolsData: Data for the VariantTools tutorial

Description

Reference genotypes for NA12878 and NA19240, as called by the HapMap project, and the Broad GATK project.

Usage

data(geno)

Format

A VRanges with the genotypes for NA12878 and NA19240 from the HapMap pilot project and the Broad/GATK calling of NA12878. The genotypes, stored in the "freq." columns, are represented by the alt frequency, so 0/0.5/1 for hom-ref/het/hom-alt. The "expected.freq" column indicates the alt frequency expected in the 50/50 mixture.

Source

The HapMap Pilot and Broad GATK projects.

Examples

data(geno)
table(geno$expected.freq)

lawremi/VariantToolsData documentation built on May 20, 2019, 8:26 p.m.