repeats: Simple repeats

In lawremi/VariantToolsData: Data for the VariantTools tutorial

Description

Repeat regions from the RepeatMasker track of the hg19 UCSC genome browser database, subset to low complexity and simple repeats.

Usage

data(repeats)

Format

A GRanges object with the repeat ranges, including variables classifying the repeats by name, class, and family, and information about the alignment of the repeat consensus to the genome.

Source

The "rmsk" table in the UCSC table browser (hg19). Click the "Describe Schema" button for details.

Examples

data(repeats)
tab <- table(repeats$repFamily)
tab[tab > 0]

lawremi/VariantToolsData documentation built on May 20, 2019, 8:26 p.m.