stat_mismatch-method: Calculate mismatch summary

stat_mismatchR Documentation

Calculate mismatch summary

Description

Calculate mismatch summary

Usage

## for GRanges
## S4 method for signature 'GRanges'
stat_mismatch(data, ..., bsgenome, 
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)
## for BamFile
## S4 method for signature 'BamFile'
stat_mismatch(data, ..., bsgenome, which,
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)

Arguments

data

A GRanges or BamFile object.

...

Extra parameters such as aes() passed to geom_rect, geom_alignment, or geom_segment.

bsgenome

BSgenome object.

which

GRanges object to subset the data.

xlab

Label for x

ylab

Label for y

main

Title for plot.

geom

The geometric object to use display the data.

show.coverage

whether to show coverage as background or not.

Value

A 'Layer'.

Author(s)

Tengfei Yin


lawremi/ggbio documentation built on Nov. 1, 2023, 2:40 p.m.