build_tree_graph: Build tree graph

In lazappi/clustree: Visualise Clusterings at Different Resolutions

Build tree graph

Description

Build a tree graph from a set of clusterings, metadata and associated aesthetics

Usage

build_tree_graph(
  clusterings,
  prefix,
  count_filter,
  prop_filter,
  metadata,
  node_aes_list
)

Arguments

clusterings	numeric matrix containing clustering information, each column contains clustering at a separate resolution
prefix	string indicating columns containing clustering information
count_filter	count threshold for filtering edges in the clustering graph
prop_filter	in proportion threshold for filtering edges in the clustering graph
metadata	data.frame containing metadata on each sample that can be used as node aesthetics
node_aes_list	nested list containing node aesthetics

Value

tidygraph::tbl_graph object containing the tree graph

lazappi/clustree documentation built on Nov. 9, 2023, 7:54 p.m.