licorvalues: Calculate steady state and kinetics values from Li-COR data.

In lbmountain/licornetics: Plot and calculate physiological parameters using LI-COR data

Calculate steady state and kinetics values from Li-COR data.

Description

Calculate steady state values and kinetics parameters and plot curves from data measured using the Li-COR photosystem.

Usage

licorvalues(
  identifier,
  transition = list("All"),
  stomden = NULL,
  label = NULL,
  show_individuals = F,
  remove_outliers = "no",
  colours = NULL,
  errorbars = "se"
)

Arguments

identifier	Keywords that distinguish the Li-COR .xlsx files for the different datasets (e.g. "wt", "mutant1").
transition	Split your data into different time frames to distinguish between transition phases. Default uses all time points at once. Input as lists (e.g. 'list(c(14:25), c(26:37))')
stomden	Normalise data by stomatal density (in unit stomata/mm2). Order of input must follow order of identifiers. (e.g. 'c(50, 100, 70)')
show_individuals	Change final plot output in R to depict plots for each single input file. Default shows averaged plots for each identifier.
remove_outliers	Optionally remove boxplot outliers by setting to "yes" (based on outliers from the 'A' column).
colours	Set colour to be used for each identifier in final plots (e.g. 'c("red", "green")'). Default is black.

lbmountain/licornetics documentation built on April 11, 2024, 3:51 p.m.