showInteraction: showInteraction

In lch14forever/BEEM-static: An EM-like algorithm for biomass and microbiome model inference from cross sectional microbial profiling data

Description

plot the interaction network inferred by beem (using ggraph)

Usage

showInteraction(beem.out, dat, layout = "fr", node.text.size = 2,
  t.strength = 0.001, t.stab = 0.8, node.text.repel = TRUE)

Arguments

beem.out	output of a beem run
dat	input data for the beem run
layout	graph layout (see the documentation for ggraph)
node.text.size	node text size
t.strength	the threshold used to limit the number of interactions (strength)
t.stab	the threshold used to limit the number of interactions (stability)
node.text.repel	use ggrepel to arrange node labels

Author(s)

Chenhao Li, Niranjan Nagarajan

lch14forever/BEEM-static documentation built on Sept. 5, 2021, 11:31 p.m.