func.M: func.M

In lch14forever/BEEM-static: An EM-like algorithm for biomass and microbiome model inference from cross sectional microbial profiling data

Description

M-part of BEEM, estimate biomass with inferred model parameters

Usage

func.M(dat.tss, a, b, c = NULL, perturbation.presence = NULL,
  ncpu = 4)

Arguments

dat.tss	relative abundance matrix (each OTU in one row)
a	estimated growth rate values (scaled by self-interaction)
b	estimated interaction matrix (scaled by self-interaction)
c	estimated external perturbation effect matrix (scaled by self-interaction)
perturbation.presence	estimated external perturbation presence (not to be multiplied by 1/m) (each perturbation in one row, each sample in one column)
ncpu	number of CPUs (default: 4)

Author(s)

Chenhao Li, Gerald Tan, Niranjan Nagarajan

lch14forever/BEEM-static documentation built on Sept. 5, 2021, 11:31 p.m.