func.M: func.M

Description Usage Arguments Author(s)

View source: R/em_functions.r

Description

M-part of BEEM, estimate biomass with inferred model parameters

Usage

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func.M(dat.tss, a, b, c = NULL, perturbation.presence = NULL,
  ncpu = 4)

Arguments

dat.tss

relative abundance matrix (each OTU in one row)

a

estimated growth rate values (scaled by self-interaction)

b

estimated interaction matrix (scaled by self-interaction)

c

estimated external perturbation effect matrix (scaled by self-interaction)

perturbation.presence

estimated external perturbation presence (not to be multiplied by 1/m) (each perturbation in one row, each sample in one column)

ncpu

number of CPUs (default: 4)

Author(s)

Chenhao Li, Gerald Tan, Niranjan Nagarajan


lch14forever/BEEM-static documentation built on Jan. 8, 2020, 11:22 a.m.