Files in lch14forever/BEEM
BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/emFunctions.r
README.md
beem.Rproj
logo.png
man/BLASSO.Rd
man/EM.Rd
man/NORM.Rd
man/SmoothGradient.Rd
man/alr.transformation.Rd
man/alr.transformation.inv.Rd
man/biomassFromEM.Rd
man/clr.transformation.Rd
man/cumSumScale.Rd
man/formatOutput.Rd
man/inspectEM.Rd
man/param.infer.Rd
man/paramFromEM.Rd
man/postProcessBeta.Rd
man/postProcessGamma.Rd
man/preProcess.Rd
man/smooth.deri.glkerns.Rd
man/smooth.deri.pspline.Rd
man/splitAt.Rd
man/suggestRefs.Rd
man/testStop.Rd
man/tsoutliers.Rd
man/tsoutliers.w.brks.Rd
vignettes/gibbons_et_al.ipynb
vignettes/gibbons_et_al_analysis/.Rhistory
vignettes/gibbons_et_al_analysis/DA.EM.rds
vignettes/gibbons_et_al_analysis/DA.counts.txt
vignettes/gibbons_et_al_analysis/DA.metadata.txt
vignettes/gibbons_et_al_analysis/DA.params.txt
vignettes/gibbons_et_al_analysis/DB.EM.rds
vignettes/gibbons_et_al_analysis/DB.counts.txt
vignettes/gibbons_et_al_analysis/DB.metadata.txt
vignettes/gibbons_et_al_analysis/DB.params.txt
vignettes/gibbons_et_al_analysis/F4.EM.rds
vignettes/gibbons_et_al_analysis/F4.counts.txt
vignettes/gibbons_et_al_analysis/F4.metadata.txt
vignettes/gibbons_et_al_analysis/F4.params.txt
vignettes/gibbons_et_al_analysis/M3.EM.rds
vignettes/gibbons_et_al_analysis/M3.counts.txt
vignettes/gibbons_et_al_analysis/M3.metadata.txt
vignettes/gibbons_et_al_analysis/M3.params.txt
vignettes/gibbons_et_al_analysis/all_otu_mapping.txt
vignettes/props_et_al.ipynb
vignettes/props_et_al_analysis/biomass.sel.metagenomeSeq.txt
vignettes/props_et_al_analysis/biomass.sel.txt
vignettes/props_et_al_analysis/counts.sel.txt
vignettes/props_et_al_analysis/metadata.sel.txt
vignettes/simulation.ipynb
